1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:8.94e-28:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ990_RS02845
Response regulator OmpR family
Dorea longicatena · GCF_001404635
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404635#AQ990_RS02845Stable P2CS identifier used across views.
GenomeGCF_001404635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:153:1.99e-24:228:77:77- Raw architecture: Response_reg:3:8.94e-28:113:112:111#Trans_reg_C:153:1.99e-24:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404635::NZ_CYYM01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span166440-168142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852408_00583RefSeq proteinWP_055193756.1
Context group ID
GCF_001404635::NZ_CYYM01000002.1::G00006Context members
AQ990_RS02845AQ990_RS02850
Partner locus tags
AQ990_RS02845AQ990_RS02850
Partner old locus tags
ERS852408_00583ERS852408_00584
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055193756.1Primary protein accession used for annex mappings.
UniProt accessionA0ABW8AXP8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABW8AXP8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ990_RS02845Primary locus identifier stored in the genes table.
Old locus tagERS852408_00583Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYM01000002.1Sequence record reported by the local genomic context database.
Genomic interval166 440-167 126 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span166 440-168 142 ntGCF_001404635::NZ_CYYM01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404635::NZ_CYYM01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span166 440-168 142 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
166 440 nt168 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ990_RS02845GCF_001404635#AQ990_RS02845
RROmpRCurrent focus
166 440-167 126 nt · Forward (+)
AQ990_RS02850GCF_001404635#AQ990_RS02850
HKClassic
167 123-168 142 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404635#AQ990_RS02845The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1308070
Simplified PFAM architecture for RROC_1308070
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1308070
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_001404635#AQ990_RS02845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_001404635
Assembly13414_6#35 · Scaffoldhaploid
Genome composition3 033 150 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key