1 HisKA#1
160-218 aa · 59 aa · 15.3% of protein
Raw token
HisKA:160:0.000000272:218:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS02655
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS02655Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 386 aa (42.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
264-369 aa · 106 aa · 27.5% of protein
Raw token
HATPase_c:264:7.23e-20:369:108:109- Raw architecture: HisKA:160:0.000000272:218:59:64#HATPase_c:264:7.23e-20:369:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69605-71465Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00538RefSeq proteinWP_172676577.1
Context group ID
GCF_001404595::NZ_CYYN01000003.1::G00004Context members
AQ998_RS02655AQ998_RS02660
Partner locus tags
AQ998_RS02655AQ998_RS02660
Partner old locus tags
ERS852389_00538ERS852389_00539
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_172676577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS02655Primary locus identifier stored in the genes table.
Old locus tagERS852389_00538Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000003.1Sequence record reported by the local genomic context database.
Genomic interval69 605-70 765 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span69 605-71 465 ntGCF_001404595::NZ_CYYN01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span69 605-71 465 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 605 nt71 465 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS02655GCF_001404595#AQ998_RS02655
HKClassicCurrent focus
69 605-70 765 nt · Reverse (-)
AQ998_RS02660GCF_001404595#AQ998_RS02660
RROmpR
70 752-71 465 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS02655The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2558299
Simplified PFAM architecture for HKOC_2558299
PFAM domain coverage: 167 / 386 aa (43.3%)
1 aa386 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[157-218] | HATPase_c[266-370]
- Domain count: 2
- Matched identifier: HKOC_2558299
- Positioned domains: HisKA 157-218 ; HATPase_c 266-370
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS02655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key