1 HisKA#1
661-727 aa · 67 aa · 7.6% of protein
Raw token
HisKA:661:0.00000000000000902:727:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS10310
Histidine kinase, Classic
Blautia obeum · GCF_001404455
ClassHKTypeClassicLength885 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404455#ARA27_RS10310Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length885 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 885 aa (18.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa885 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
773-865 aa · 93 aa · 10.5% of protein
Raw token
HATPase_c:773:0.000000000178:865:97:109- Raw architecture: HisKA:661:0.00000000000000902:727:67:64#HATPase_c:773:0.000000000178:865:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404455::NZ_CYZA01000010.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113985-117536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_02112RefSeq proteinWP_055053594.1
Context group ID
GCF_001404455::NZ_CYZA01000010.1::G00023Context members
ARA27_RS10310ARA27_RS10315
Partner locus tags
ARA27_RS10310ARA27_RS10315
Partner old locus tags
ERS852395_02112ERS852395_02113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055053594.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CGZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CGZ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS10310Primary locus identifier stored in the genes table.
Old locus tagERS852395_02112Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000010.1Sequence record reported by the local genomic context database.
Genomic interval113 985-116 642 nt2 658 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 985-117 536 ntGCF_001404455::NZ_CYZA01000010.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000010.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000010.1All displayed genes belong to this local TCS context.
Neighborhood span113 985-117 536 nt3 552 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 985 nt117 536 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA27_RS10310GCF_001404455#ARA27_RS10310
HKClassicCurrent focus
113 985-116 642 nt · Reverse (-)
ARA27_RS10315GCF_001404455#ARA27_RS10315
RROmpR
116 841-117 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS10310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0436256
Simplified PFAM architecture for HKOC_0436256
PFAM domain coverage: 157 / 885 aa (17.7%)
1 aa885 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[662-726] | HATPase_c[774-865]
- Domain count: 2
- Matched identifier: HKOC_0436256
- Positioned domains: HisKA 662-726 ; HATPase_c 774-865
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS10310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key