1 dCache_1#1
135-279 aa · 145 aa · 14.7% of protein
Raw token
dCache_1:135:0.0000646:279:147:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA27_RS02685
Histidine kinase, Hybrid
Blautia obeum · GCF_001404455
ClassHKTypeHybridLength984 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404455#ARA27_RS02685Stable P2CS identifier used across views.
GenomeGCF_001404455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1PAS_3HisKAHATPase_cResponse_reg
Protein length984 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage629 / 984 aa (63.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation6 items
2 PAS_3#2
360-426 aa · 67 aa · 6.8% of protein
Raw token
PAS_3:360:0.00000226:426:71:893 HisKA#3
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:6.7e-20:536:67:644 HATPase_c#4
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:4.49e-32:701:118:1095 Response_reg#5
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:2.1e-19:833:114:1116 Response_reg#6
861-978 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:861:1.18e-31:978:118:111- Raw architecture: dCache_1:135:0.0000646:279:147:195#PAS_3:360:0.00000226:426:71:89#HisKA:470:6.7e-20:536:67:64#HATPase_c:584:4.49e-32:701:118:109#Response_reg:720:2.1e-19:833:114:111#Response_reg:861:1.18e-31:978:118:111
- Domain description: 1 dCache_1,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404455::NZ_CYZA01000002.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span56956-59910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852395_00548RefSeq proteinWP_055052650.1
Context group ID
GCF_001404455::NZ_CYZA01000002.1::G00005Context members
ARA27_RS02685
Partner locus tags
ARA27_RS02685
Partner old locus tags
ERS852395_00548
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055052650.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XHI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XHI0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA27_RS02685Primary locus identifier stored in the genes table.
Old locus tagERS852395_00548Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZA01000002.1Sequence record reported by the local genomic context database.
Genomic interval56 956-59 910 nt2 955 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span56 956-59 910 ntGCF_001404455::NZ_CYZA01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404455::NZ_CYZA01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZA01000002.1All displayed genes belong to this local TCS context.
Neighborhood span56 956-59 910 nt2 955 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 956 nt59 910 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA27_RS02685GCF_001404455#ARA27_RS02685
HKHybridCurrent focus
56 956-59 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS02685The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0301720
Simplified PFAM architecture for HKOC_0301720
PFAM domain coverage: 414 / 984 aa (42.1%)
1 aa984 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0301720
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS02685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404455
Assembly13414_6#22 · Scaffoldhaploid
Genome composition3 731 704 bp · 41,0% GCBlautia obeum
Signal transduction countsGenes 75 · HK 36 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key