1 sCache_like#1
52-127 aa · 76 aa · 17.4% of protein
Raw token
sCache_like:52:0.0000193:127:76:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS09640
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS09640Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 438 aa (57.3%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
220-285 aa · 66 aa · 15.1% of protein
Raw token
HisKA:220:2.97e-18:285:66:643 HATPase_c#3
330-438 aa · 109 aa · 24.9% of protein
Raw token
HATPase_c:330:8.16e-31:438:109:109- Raw architecture: sCache_like:52:0.0000193:127:76:114#HisKA:220:2.97e-18:285:66:64#HATPase_c:330:8.16e-31:438:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span251591-253611Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01996RefSeq proteinWP_055215931.1
Context group ID
GCF_001404435::NZ_CZBU01000004.1::G00029Context members
ARA42_RS09635ARA42_RS09640
Partner locus tags
ARA42_RS09635ARA42_RS09640
Partner old locus tags
ERS852490_01995ERS852490_01996
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055215931.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Z2T3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Z2T3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS09640Primary locus identifier stored in the genes table.
Old locus tagERS852490_01996Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000004.1Sequence record reported by the local genomic context database.
Genomic interval252 295-253 611 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span251 591-253 611 ntGCF_001404435::NZ_CZBU01000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span251 591-253 611 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
251 591 nt253 611 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS09635GCF_001404435#ARA42_RS09635
RROmpR
251 591-252 259 nt · Forward (+)
ARA42_RS09640GCF_001404435#ARA42_RS09640
HKClassicCurrent focus
252 295-253 611 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS09640The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093690
Simplified PFAM architecture for HKOC_2093690
PFAM domain coverage: 172 / 438 aa (39.3%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[221-285] | HATPase_c[331-437]
- Domain count: 2
- Matched identifier: HKOC_2093690
- Positioned domains: HisKA 221-285 ; HATPase_c 331-437
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS09640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key