1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000763:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS09455
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS09455Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 458 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000109:294:62:643 HATPase_c#3
348-451 aa · 104 aa · 22.7% of protein
Raw token
HATPase_c:348:6.81e-17:451:104:109- Raw architecture: HAMP:152:0.0000763:222:71:69#HisKA:233:0.0000000000109:294:62:64#HATPase_c:348:6.81e-17:451:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000004.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213476-215502Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01957RefSeq proteinWP_055215907.1
Context group ID
GCF_001404435::NZ_CZBU01000004.1::G00027Context members
ARA42_RS09450ARA42_RS09455
Partner locus tags
ARA42_RS09450ARA42_RS09455
Partner old locus tags
ERS852490_01956ERS852490_01957
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055215907.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS09455Primary locus identifier stored in the genes table.
Old locus tagERS852490_01957Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000004.1Sequence record reported by the local genomic context database.
Genomic interval214 126-215 502 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span213 476-215 502 ntGCF_001404435::NZ_CZBU01000004.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000004.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span213 476-215 502 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 476 nt215 502 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS09450GCF_001404435#ARA42_RS09450
RROmpR
213 476-214 138 nt · Forward (+)
ARA42_RS09455GCF_001404435#ARA42_RS09455
HKClassicCurrent focus
214 126-215 502 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS09455The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860006
Simplified PFAM architecture for HKOC_1860006
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-294] | HATPase_c[348-451]
- Domain count: 2
- Matched identifier: HKOC_1860006
- Positioned domains: HisKA 233-294 ; HATPase_c 348-451
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS09455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key