1 HAMP#1
293-362 aa · 70 aa · 12.0% of protein
Raw token
HAMP:293:0.00000000000000132:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS09170
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS09170Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 585 aa (44.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-456 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:377:1.78e-30:456:80:803 HATPase_c#3
472-580 aa · 109 aa · 18.6% of protein
Raw token
HATPase_c:472:0.000000000000453:580:118:109- Raw architecture: HAMP:293:0.00000000000000132:362:70:69#His_kinase:377:1.78e-30:456:80:80#HATPase_c:472:0.000000000000453:580:118:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000004.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146980-150278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01899RefSeq proteinWP_055215876.1
Context group ID
GCF_001404435::NZ_CZBU01000004.1::G00026Context members
ARA42_RS09165ARA42_RS09170
Partner locus tags
ARA42_RS09165ARA42_RS09170
Partner old locus tags
ERS852490_01898ERS852490_01899
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055215876.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Z579Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Z579_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS09170Primary locus identifier stored in the genes table.
Old locus tagERS852490_01899Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000004.1Sequence record reported by the local genomic context database.
Genomic interval148 521-150 278 nt1 758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 980-150 278 ntGCF_001404435::NZ_CZBU01000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span146 980-150 278 nt3 299 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 980 nt150 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS09165GCF_001404435#ARA42_RS09165
RRunclassified
146 980-148 524 nt · Forward (+)
ARA42_RS09170GCF_001404435#ARA42_RS09170
HKClassicCurrent focus
148 521-150 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS09170The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1136754
Simplified PFAM architecture for HKOC_1136754
PFAM domain coverage: 237 / 585 aa (40.5%)
1 aa585 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-361] | His_kinase[378-455] | HATPase_c[472-579]
- Domain count: 3
- Matched identifier: HKOC_1136754
- Positioned domains: HAMP 311-361 ; His_kinase 378-455 ; HATPase_c 472-579
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS09170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key