1 Response_reg#1
4-116 aa · 113 aa · 22.0% of protein
Raw token
Response_reg:4:2.51e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS09165
Response regulator, unclassified
Lachnospira eligens · GCF_001404435
ClassRRTypeunclassifiedLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS09165Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 514 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
418-459 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:418:0.0000219:459:42:423 HTH_AraC#3
473-508 aa · 36 aa · 7.0% of protein
Raw token
HTH_AraC:473:0.000000675:508:36:42- Raw architecture: Response_reg:4:2.51e-27:116:113:111#HTH_AraC:418:0.0000219:459:42:42#HTH_AraC:473:0.000000675:508:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000004.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146980-150278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01898RefSeq proteinWP_055215875.1
Context group ID
GCF_001404435::NZ_CZBU01000004.1::G00026Context members
ARA42_RS09165ARA42_RS09170
Partner locus tags
ARA42_RS09165ARA42_RS09170
Partner old locus tags
ERS852490_01898ERS852490_01899
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055215875.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YZK1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YZK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS09165Primary locus identifier stored in the genes table.
Old locus tagERS852490_01898Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000004.1Sequence record reported by the local genomic context database.
Genomic interval146 980-148 524 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 980-150 278 ntGCF_001404435::NZ_CZBU01000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span146 980-150 278 nt3 299 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 980 nt150 278 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS09165GCF_001404435#ARA42_RS09165
RRunclassifiedCurrent focus
146 980-148 524 nt · Forward (+)
ARA42_RS09170GCF_001404435#ARA42_RS09170
HKClassic
148 521-150 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS09165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0138635
Simplified PFAM architecture for RROC_0138635
PFAM domain coverage: 196 / 514 aa (38.1%)
1 aa514 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-120] | HTH_18[431-509]
- Domain count: 2
- Matched identifier: RROC_0138635
- Positioned domains: Response_reg 4-120 ; Response_reg 4-120 ; HTH_18 431-509 ; HTH_18 431-509
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS09165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key