1 Response_reg#1
4-115 aa · 112 aa · 92.6% of protein
Raw token
Response_reg:4:3.17e-33:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS08175
Response regulator, CheY family
Lachnospira eligens · GCF_001404435
ClassRRTypeCheYLength121 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404435#ARA42_RS08175Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length121 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 121 aa (92.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa121 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.17e-33:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404435::NZ_CZBU01000003.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span461650-462015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_01699RefSeq proteinWP_022098774.1
Context group ID
GCF_001404435::NZ_CZBU01000003.1::G00024Context members
ARA42_RS08175
Partner locus tags
ARA42_RS08175
Partner old locus tags
ERS852490_01699
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022098774.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YY70Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YY70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS08175Primary locus identifier stored in the genes table.
Old locus tagERS852490_01699Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000003.1Sequence record reported by the local genomic context database.
Genomic interval461 650-462 015 nt366 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span461 650-462 015 ntGCF_001404435::NZ_CZBU01000003.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000003.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span461 650-462 015 nt366 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
461 650 nt462 015 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA42_RS08175GCF_001404435#ARA42_RS08175
RRCheYCurrent focus
461 650-462 015 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS08175The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2418313
Simplified PFAM architecture for RROC_2418313
PFAM domain coverage: 111 / 121 aa (91.7%)
1 aa121 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_2418313
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS08175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key