1 HAMP#1
75-139 aa · 65 aa · 18.1% of protein
Raw token
HAMP:75:0.00000131:139:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS03585
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS03585Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 360 aa (62.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
152-213 aa · 62 aa · 17.2% of protein
Raw token
HisKA:152:0.0000000122:213:63:643 HATPase_c#3
263-359 aa · 97 aa · 26.9% of protein
Raw token
HATPase_c:263:3.26e-17:359:99:109- Raw architecture: HAMP:75:0.00000131:139:66:69#HisKA:152:0.0000000122:213:63:64#HATPase_c:263:3.26e-17:359:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82929-84694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00743RefSeq proteinWP_055214769.1
Context group ID
GCF_001404435::NZ_CZBU01000002.1::G00015Context members
ARA42_RS03580ARA42_RS03585
Partner locus tags
ARA42_RS03580ARA42_RS03585
Partner old locus tags
ERS852490_00742ERS852490_00743
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055214769.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YQR8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YQR8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS03585Primary locus identifier stored in the genes table.
Old locus tagERS852490_00743Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000002.1Sequence record reported by the local genomic context database.
Genomic interval83 612-84 694 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 929-84 694 ntGCF_001404435::NZ_CZBU01000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span82 929-84 694 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 929 nt84 694 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS03580GCF_001404435#ARA42_RS03580
RROmpR
82 929-83 606 nt · Forward (+)
ARA42_RS03585GCF_001404435#ARA42_RS03585
HKClassicCurrent focus
83 612-84 694 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS14000Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2714740
Simplified PFAM architecture for HKOC_2714740
PFAM domain coverage: 197 / 366 aa (53.8%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[107-146] | HisKA[159-219] | HATPase_c[268-363]
- Domain count: 3
- Matched identifier: HKOC_2714740
- Positioned domains: HAMP 107-146 ; HisKA 159-219 ; HATPase_c 268-363
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS14000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key