1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:1.39e-26:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS03135
Response regulator OmpR family
Lachnospira eligens · GCF_001404435
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001404435#ARA42_RS03135Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 221 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:145:2.2e-21:220:77:77- Raw architecture: Response_reg:4:1.39e-26:113:111:111#Trans_reg_C:145:2.2e-21:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001404435::NZ_CZBU01000002.1::G00012
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span4123-6534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00656RefSeq proteinWP_055214645.1
Context group ID
GCF_001404435::NZ_CZBU01000002.1::G00012Context members
ARA42_RS03135ARA42_RS03140ARA42_RS03145
Partner locus tags
ARA42_RS03135ARA42_RS03140ARA42_RS03145
Partner old locus tags
ERS852490_00656ERS852490_00657ERS852490_00658
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055214645.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YYL0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YYL0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS03135Primary locus identifier stored in the genes table.
Old locus tagERS852490_00656Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000002.1Sequence record reported by the local genomic context database.
Genomic interval4 123-4 788 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 123-6 534 ntGCF_001404435::NZ_CZBU01000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span4 123-6 534 nt2 412 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 123 nt6 534 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
ARA42_RS03135GCF_001404435#ARA42_RS03135
RROmpRCurrent focus
4 123-4 788 nt · Forward (+)
ARA42_RS03140GCF_001404435#ARA42_RS03140
HKClassic
4 785-5 843 nt · Forward (+)
ARA42_RS03145GCF_001404435#ARA42_RS03145
RRLytTR
5 824-6 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS03135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1681973
Simplified PFAM architecture for RROC_1681973
PFAM domain coverage: 184 / 221 aa (83.3%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1681973
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS03135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key