1 HisKA#1
173-235 aa · 63 aa · 16.1% of protein
Raw token
HisKA:173:0.0000000000000202:235:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS02545
Histidine kinase, Classic
Lachnospira eligens · GCF_001404435
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404435#ARA42_RS02545Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 391 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-381 aa · 105 aa · 26.9% of protein
Raw token
HATPase_c:277:3.01e-22:381:107:109- Raw architecture: HisKA:173:0.0000000000000202:235:64:64#HATPase_c:277:3.01e-22:381:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404435::NZ_CZBU01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span540581-542493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00533RefSeq proteinWP_055214471.1
Context group ID
GCF_001404435::NZ_CZBU01000001.1::G00010Context members
ARA42_RS02540ARA42_RS02545
Partner locus tags
ARA42_RS02540ARA42_RS02545
Partner old locus tags
ERS852490_00532ERS852490_00533
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055214471.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YUN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YUN3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS02545Primary locus identifier stored in the genes table.
Old locus tagERS852490_00533Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000001.1Sequence record reported by the local genomic context database.
Genomic interval541 318-542 493 nt1 176 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span540 581-542 493 ntGCF_001404435::NZ_CZBU01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span540 581-542 493 nt1 913 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
540 581 nt542 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA42_RS02540GCF_001404435#ARA42_RS02540
RROmpR
540 581-541 261 nt · Reverse (-)
ARA42_RS02545GCF_001404435#ARA42_RS02545
HKClassicCurrent focus
541 318-542 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS02545The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2519976
Simplified PFAM architecture for HKOC_2519976
PFAM domain coverage: 167 / 391 aa (42.7%)
1 aa391 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[174-235] | HATPase_c[278-382]
- Domain count: 2
- Matched identifier: HKOC_2519976
- Positioned domains: HisKA 174-235 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS02545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key