1 HisKA#1
357-423 aa · 67 aa · 9.1% of protein
Raw token
HisKA:357:0.0000000000000151:423:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS01880
Histidine kinase, Hybrid
Lachnospira eligens · GCF_001404435
ClassHKTypeHybridLength734 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404435#ARA42_RS01880Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length734 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 734 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa734 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
472-589 aa · 118 aa · 16.1% of protein
Raw token
HATPase_c:472:1.48e-27:589:119:1093 Response_reg#3
612-729 aa · 118 aa · 16.1% of protein
Raw token
Response_reg:612:8.57e-28:729:118:111- Raw architecture: HisKA:357:0.0000000000000151:423:71:64#HATPase_c:472:1.48e-27:589:119:109#Response_reg:612:8.57e-28:729:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404435::NZ_CZBU01000001.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span390577-392781Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00394RefSeq proteinWP_055214276.1
Context group ID
GCF_001404435::NZ_CZBU01000001.1::G00008Context members
ARA42_RS01880
Partner locus tags
ARA42_RS01880
Partner old locus tags
ERS852490_00394
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055214276.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YX24Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YX24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS01880Primary locus identifier stored in the genes table.
Old locus tagERS852490_00394Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000001.1Sequence record reported by the local genomic context database.
Genomic interval390 577-392 781 nt2 205 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span390 577-392 781 ntGCF_001404435::NZ_CZBU01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span390 577-392 781 nt2 205 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
390 577 nt392 781 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA42_RS01880GCF_001404435#ARA42_RS01880
HKHybridCurrent focus
390 577-392 781 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS01880The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0704151
Simplified PFAM architecture for HKOC_0704151
PFAM domain coverage: 297 / 734 aa (40.5%)
1 aa734 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[357-423] | HATPase_c[473-588] | Response_reg[612-725]
- Domain count: 3
- Matched identifier: HKOC_0704151
- Positioned domains: HisKA 357-423 ; HATPase_c 473-588 ; Response_reg 612-725
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS01880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key