1 Response_reg#1
3-112 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:3:0.0000000000000169:112:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA42_RS00165
Response regulator LytTR family
Lachnospira eligens · GCF_001404435
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404435#ARA42_RS00165Stable P2CS identifier used across views.
GenomeGCF_001404435Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 236 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-228 aa · 90 aa · 38.1% of protein
Raw token
LytTR:139:0.000000000145:228:95:98- Raw architecture: Response_reg:3:0.0000000000000169:112:114:111#LytTR:139:0.000000000145:228:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404435::NZ_CZBU01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33593-34303Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852490_00039RefSeq proteinWP_055213947.1
Context group ID
GCF_001404435::NZ_CZBU01000001.1::G00003Context members
ARA42_RS00165
Partner locus tags
ARA42_RS00165
Partner old locus tags
ERS852490_00039
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055213947.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YHN1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YHN1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA42_RS00165Primary locus identifier stored in the genes table.
Old locus tagERS852490_00039Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBU01000001.1Sequence record reported by the local genomic context database.
Genomic interval33 593-34 303 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 593-34 303 ntGCF_001404435::NZ_CZBU01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404435::NZ_CZBU01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span33 593-34 303 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 593 nt34 303 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA42_RS00165GCF_001404435#ARA42_RS00165
RRLytTRCurrent focus
33 593-34 303 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS00165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0991705
Simplified PFAM architecture for RROC_0991705
PFAM domain coverage: 200 / 236 aa (84.7%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-112] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0991705
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS00165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 485 · GCF_001404435
Assembly13470_2#94 · Scaffoldhaploid
Genome composition3 222 162 bp · 37,5% GCLachnospira eligens
Signal transduction countsGenes 68 · HK 30 · RR 37CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusLachnospira
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Lachnospira
Related genes
Preview from the same derived genome key