1 Response_reg#1
10-123 aa · 114 aa · 16.5% of protein
Raw token
Response_reg:10:3.93e-29:123:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS04390
Response regulator, RpfG family
Faecalicatena contorta · GCF_001404335
ClassRRTypeRpfGLength690 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404335#ARB69_RS04390Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage398 / 690 aa (57.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation3 items
2 HD#2
171-303 aa · 133 aa · 19.3% of protein
Raw token
HD:171:0.000000000000435:303:133:1103 GGDEF#3
520-670 aa · 151 aa · 21.9% of protein
Raw token
GGDEF:520:1.26e-28:670:160:160- Raw architecture: Response_reg:10:3.93e-29:123:115:111#HD:171:0.000000000000435:303:133:110#GGDEF:520:1.26e-28:670:160:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404335::NZ_CYZU01000006.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13444-15516Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00881RefSeq proteinWP_055151362.1
Context group ID
GCF_001404335::NZ_CYZU01000006.1::G00012Context members
ARB69_RS04390
Partner locus tags
ARB69_RS04390
Partner old locus tags
ERS852491_00881
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055151362.1Primary protein accession used for annex mappings.
UniProt accessionA0A174B1Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174B1Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS04390Primary locus identifier stored in the genes table.
Old locus tagERS852491_00881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000006.1Sequence record reported by the local genomic context database.
Genomic interval13 444-15 516 nt2 073 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 444-15 516 ntGCF_001404335::NZ_CYZU01000006.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000006.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000006.1All displayed genes belong to this local TCS context.
Neighborhood span13 444-15 516 nt2 073 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 444 nt15 516 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARB69_RS04390GCF_001404335#ARB69_RS04390
RRRpfGCurrent focus
13 444-15 516 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS04390The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0031787
Simplified PFAM architecture for RROC_0031787
PFAM domain coverage: 395 / 690 aa (57.2%)
1 aa690 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-122] | HD_5[192-323] | GGDEF[520-669]
- Domain count: 3
- Matched identifier: RROC_0031787
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; HD_5 192-323 ; HD_5 192-323 ; GGDEF 520-669 ; GGDEF 520-669
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS04390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key