1 HisKA_3#1
265-329 aa · 65 aa · 13.4% of protein
Raw token
HisKA_3:265:0.00000000000821:329:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY67_RS05670
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_001281305
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001281305#RY67_RS05670Stable P2CS identifier used across views.
GenomeGCF_001281305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 485 aa (31.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
395-480 aa · 86 aa · 17.7% of protein
Raw token
HATPase_c:395:0.0000347:480:96:109- Raw architecture: HisKA_3:265:0.00000000000821:329:65:68#HATPase_c:395:0.0000347:480:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001281305::NZ_CP010411.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1335634-1337833Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY67_1219RefSeq proteinWP_235625902.1
Context group ID
GCF_001281305::NZ_CP010411.1::G00012Context members
RY67_RS05665RY67_RS05670
Partner locus tags
RY67_RS05665RY67_RS05670
Partner old locus tags
RY67_1218RY67_1219
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_235625902.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4MEH7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4MEH7_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY67_RS05670Primary locus identifier stored in the genes table.
Old locus tagRY67_1219Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010411.1Sequence record reported by the local genomic context database.
Genomic interval1 336 376-1 337 833 nt1 458 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 335 634-1 337 833 ntGCF_001281305::NZ_CP010411.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281305::NZ_CP010411.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010411.1All displayed genes belong to this local TCS context.
Neighborhood span1 335 634-1 337 833 nt2 200 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 335 634 nt1 337 833 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RY67_RS05665GCF_001281305#RY67_RS05665
RRNarL
1 335 634-1 336 362 nt · Reverse (-)
RY67_RS05670GCF_001281305#RY67_RS05670
HKClassicCurrent focus
1 336 376-1 337 833 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS05670The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1576685
Simplified PFAM architecture for HKOC_1576685
PFAM domain coverage: 68 / 485 aa (14.0%)
1 aa485 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[265-332]
- Domain count: 1
- Matched identifier: HKOC_1576685
- Positioned domains: HisKA_3 265-332
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS05670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001281305
AssemblyASM128130v1 · Complete Genomehaploid
Genome composition2 578 115 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key