1 HisKA#1
180-245 aa · 66 aa · 14.4% of protein
Raw token
HisKA:180:0.000000000036:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY67_RS04950
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_001281305
ClassHKTypeClassicLength459 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001281305#RY67_RS04950Stable P2CS identifier used across views.
GenomeGCF_001281305Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length459 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 459 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
307-418 aa · 112 aa · 24.4% of protein
Raw token
HATPase_c:307:8.22e-30:418:112:109- Raw architecture: HisKA:180:0.000000000036:245:66:64#HATPase_c:307:8.22e-30:418:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001281305::NZ_CP010411.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1178023-1180290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY67_1067RefSeq proteinWP_060620555.1
Context group ID
GCF_001281305::NZ_CP010411.1::G00006Context members
RY67_RS04950RY67_RS04955
Partner locus tags
RY67_RS04950RY67_RS04955
Partner old locus tags
RY67_1067RY67_1068
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060620555.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M4LU31Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M4LU31_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY67_RS04950Primary locus identifier stored in the genes table.
Old locus tagRY67_1067Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010411.1Sequence record reported by the local genomic context database.
Genomic interval1 178 023-1 179 402 nt1 380 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 178 023-1 180 290 ntGCF_001281305::NZ_CP010411.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281305::NZ_CP010411.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010411.1All displayed genes belong to this local TCS context.
Neighborhood span1 178 023-1 180 290 nt2 268 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 178 023 nt1 180 290 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RY67_RS04950GCF_001281305#RY67_RS04950
HKClassicCurrent focus
1 178 023-1 179 402 nt · Forward (+)
RY67_RS04955GCF_001281305#RY67_RS04955
RROmpR
1 179 586-1 180 290 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281305#RY67_RS04950The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1846864
Simplified PFAM architecture for HKOC_1846864
PFAM domain coverage: 176 / 459 aa (38.3%)
1 aa459 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[308-418]
- Domain count: 2
- Matched identifier: HKOC_1846864
- Positioned domains: HisKA 180-244 ; HATPase_c 308-418
Cluster members and taxonomy
Representative gene: GCF_001281305#RY67_RS04950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001281305
AssemblyASM128130v1 · Complete Genomehaploid
Genome composition2 578 115 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 13 · RR 24CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key