1 Response_reg#1
6-118 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:6:4.65e-36:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMM37_RS02780
Response regulator, unclassified
Escherichia coli · GCF_001269105
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001269105#AMM37_RS02780Stable P2CS identifier used across views.
GenomeGCF_001269105Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 210 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 GerE#2
149-204 aa · 56 aa · 26.7% of protein
Raw token
GerE:149:1.16e-23:204:56:57- Raw architecture: Response_reg:6:4.65e-36:118:113:111#GerE:149:1.16e-23:204:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001269105::NZ_CXWP01000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span170749-171381Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001269105::NZ_CXWP01000010.1::G00002Context members
AMM37_RS02780
Partner locus tags
AMM37_RS02780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_053265990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMM37_RS02780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CXWP01000010.1Sequence record reported by the local genomic context database.
Genomic interval170 749-171 381 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 749-171 381 ntGCF_001269105::NZ_CXWP01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001269105::NZ_CXWP01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CXWP01000010.1All displayed genes belong to this local TCS context.
Neighborhood span170 749-171 381 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 749 nt171 381 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMM37_RS02780GCF_001269105#AMM37_RS02780
RRunclassifiedCurrent focus
170 749-171 381 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001269105#AMM37_RS02780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2021439
Simplified PFAM architecture for RROC_2021439
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_2021439
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_001269105#AMM37_RS02780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001269105
Assembly1.ECAD27.1 · Contighaploid
Genome composition4 843 208 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key