1 Response_reg#1
89-158 aa · 70 aa · 26.8% of protein
Raw token
Response_reg:89:3.97e-21:158:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1604_RS02585
Response regulator NarL family
Bifidobacterium breve MCC 1604 · GCF_001264155
ClassRRTypeNarLLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001264155#BBM1604_RS02585Stable P2CS identifier used across views.
GenomeGCF_001264155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage127 / 261 aa (48.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
196-252 aa · 57 aa · 21.8% of protein
Raw token
HTH_LUXR:196:0.00000000000000148:252:58:58- Raw architecture: Response_reg:89:3.97e-21:158:70:111#HTH_LUXR:196:0.00000000000000148:252:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001264155::NZ_AVQE01000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span265263-266048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1604_02675RefSeq proteinWP_052788030.1
Context group ID
GCF_001264155::NZ_AVQE01000002.1::G00004Context members
BBM1604_RS02585
Partner locus tags
BBM1604_RS02585
Partner old locus tags
BBM1604_02675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052788030.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1604_RS02585Primary locus identifier stored in the genes table.
Old locus tagBBM1604_02675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVQE01000002.1Sequence record reported by the local genomic context database.
Genomic interval265 263-266 048 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span265 263-266 048 ntGCF_001264155::NZ_AVQE01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001264155::NZ_AVQE01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVQE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span265 263-266 048 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
265 263 nt266 048 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM1604_RS02585GCF_001264155#BBM1604_RS02585
RRNarLCurrent focus
265 263-266 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001264155#BBM1604_RS02585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648905
Simplified PFAM architecture for RROC_0648905
PFAM domain coverage: 121 / 261 aa (46.4%)
1 aa261 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[89-158] | GerE[199-249]
- Domain count: 2
- Matched identifier: RROC_0648905
- Positioned domains: Response_reg 89-158 ; Response_reg 89-158 ; GerE 199-249 ; GerE 199-249
Cluster members and taxonomy
Representative gene: GCF_001264155#BBM1604_RS02585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 968 · GCF_001264155
AssemblyASM126415v1 · Contighaploid
Genome composition2 206 390 bp · 58,5% GCBifidobacterium breve MCC 1604
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key