1 Response_reg#1
1-110 aa · 110 aa · 55.0% of protein
Raw token
Response_reg:1:7.8e-20:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1340_RS09415
Response regulator NarL family
Bifidobacterium breve MCC 1340 · GCF_001264105
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001264105#BBM1340_RS09415Stable P2CS identifier used across views.
GenomeGCF_001264105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 200 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
141-192 aa · 52 aa · 26.0% of protein
Raw token
HTH_LUXR:141:0.00000000000021:192:52:58- Raw architecture: Response_reg:1:7.8e-20:110:111:111#HTH_LUXR:141:0.00000000000021:192:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001264105::NZ_AWFT01000014.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28512-29114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1340_09735RefSeq proteinWP_003828121.1
Context group ID
GCF_001264105::NZ_AWFT01000014.1::G00010Context members
BBM1340_RS09415
Partner locus tags
BBM1340_RS09415
Partner old locus tags
BBM1340_09735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003828121.1Primary protein accession used for annex mappings.
UniProt accessionD4BM53Primary UniProt accession resolved in the annex database.
UniProt IDD4BM53_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1340_RS09415Primary locus identifier stored in the genes table.
Old locus tagBBM1340_09735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWFT01000014.1Sequence record reported by the local genomic context database.
Genomic interval28 512-29 114 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 512-29 114 ntGCF_001264105::NZ_AWFT01000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001264105::NZ_AWFT01000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWFT01000014.1All displayed genes belong to this local TCS context.
Neighborhood span28 512-29 114 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 512 nt29 114 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM1340_RS09415GCF_001264105#BBM1340_RS09415
RRNarLCurrent focus
28 512-29 114 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900157165#B1K22_RS07455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114335
Simplified PFAM architecture for RROC_2114335
PFAM domain coverage: 162 / 203 aa (79.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[2-111] | GerE[144-195]
- Domain count: 2
- Matched identifier: RROC_2114335
- Positioned domains: Response_reg 2-111 ; GerE 144-195
Cluster members and taxonomy
Representative gene: GCF_900157165#B1K22_RS07455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 966 · GCF_001264105
AssemblyASM126410v1 · Scaffoldhaploid
Genome composition2 373 106 bp · 58,5% GCBifidobacterium breve MCC 1340
Signal transduction countsGenes 21 · HK 9 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key