1 Response_reg#1
4-114 aa · 111 aa · 69.8% of protein
Raw token
Response_reg:4:1.32e-25:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBM1340_RS05380
Response regulator, CheY family
Bifidobacterium breve MCC 1340 · GCF_001264105
ClassRRTypeCheYLength159 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001264105#BBM1340_RS05380Stable P2CS identifier used across views.
GenomeGCF_001264105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length159 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 159 aa (69.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.32e-25:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001264105::NZ_AWFT01000005.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span160727-161206Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBM1340_05570RefSeq proteinWP_171842469.1
Context group ID
GCF_001264105::NZ_AWFT01000005.1::G00007Context members
BBM1340_RS05380
Partner locus tags
BBM1340_RS05380
Partner old locus tags
BBM1340_05570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_171842469.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4TYC0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4TYC0_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBM1340_RS05380Primary locus identifier stored in the genes table.
Old locus tagBBM1340_05570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWFT01000005.1Sequence record reported by the local genomic context database.
Genomic interval160 727-161 206 nt480 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span160 727-161 206 ntGCF_001264105::NZ_AWFT01000005.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001264105::NZ_AWFT01000005.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWFT01000005.1All displayed genes belong to this local TCS context.
Neighborhood span160 727-161 206 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 727 nt161 206 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBM1340_RS05380GCF_001264105#BBM1340_RS05380
RRCheYCurrent focus
160 727-161 206 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001264105#BBM1340_RS05380The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2209252
Simplified PFAM architecture for RROC_2209252
PFAM domain coverage: 110 / 159 aa (69.2%)
1 aa159 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_2209252
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_001264105#BBM1340_RS05380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 365 966 · GCF_001264105
AssemblyASM126410v1 · Scaffoldhaploid
Genome composition2 373 106 bp · 58,5% GCBifidobacterium breve MCC 1340
Signal transduction countsGenes 21 · HK 9 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key