1 HisKA#1
88-169 aa · 82 aa · 25.0% of protein
Raw token
HisKA:88:0.00000577:169:82:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN1938_RS10325
Histidine kinase, Classic
Eubacterium sp. SB2 · GCF_001244405
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001244405#BN1938_RS10325Stable P2CS identifier used across views.
GenomeGCF_001244405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 328 aa (51.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-303 aa · 88 aa · 26.8% of protein
Raw token
HATPase_c:216:3.85e-22:303:88:109- Raw architecture: HisKA:88:0.00000577:169:82:64#HATPase_c:216:3.85e-22:303:88:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001244405::NZ_LN865152.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span628539-630192Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001244405::NZ_LN865152.1::G00054Context members
BN1938_RS10325BN1938_RS10330
Partner locus tags
BN1938_RS10325BN1938_RS10330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242843835.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN1938_RS10325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN865152.1Sequence record reported by the local genomic context database.
Genomic interval628 539-629 525 nt987 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span628 539-630 192 ntGCF_001244405::NZ_LN865152.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001244405::NZ_LN865152.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN865152.1All displayed genes belong to this local TCS context.
Neighborhood span628 539-630 192 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
628 539 nt630 192 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN1938_RS10325GCF_001244405#BN1938_RS10325
HKClassicCurrent focus
628 539-629 525 nt · Reverse (-)
BN1938_RS10330GCF_001244405#BN1938_RS10330
RROmpR
629 527-630 192 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS10325The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2859685
Simplified PFAM architecture for HKOC_2859685
PFAM domain coverage: 174 / 328 aa (53.0%)
1 aa328 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-169] | HATPase_c[216-307]
- Domain count: 2
- Matched identifier: HKOC_2859685
- Positioned domains: HisKA 88-169 ; HATPase_c 216-307
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS10325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 658 112 · GCF_001244405
AssemblyEubacterium massiliense · Scaffoldhaploid
Genome composition5 156 194 bp · 46,0% GCEubacterium sp. SB2
Signal transduction countsGenes 200 · HK 99 · RR 97CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key