1 PAS#1
22-140 aa · 119 aa · 12.9% of protein
Raw token
PAS:22:0.000099:140:119:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN1938_RS00975
Histidine kinase, Hybrid
Eubacterium sp. SB2 · GCF_001244405
ClassHKTypeHybridLength926 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001244405#BN1938_RS00975Stable P2CS identifier used across views.
GenomeGCF_001244405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
PASPAS_3HisKAHATPase_cResponse_reg
Protein length926 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage611 / 926 aa (66.0%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa926 aa
Domain-by-domain annotation6 items
2 PAS_3#2
301-372 aa · 72 aa · 7.8% of protein
Raw token
PAS_3:301:0.00000000176:372:73:893 HisKA#3
414-480 aa · 67 aa · 7.2% of protein
Raw token
HisKA:414:2.33e-17:480:67:644 HATPase_c#4
527-644 aa · 118 aa · 12.7% of protein
Raw token
HATPase_c:527:1.44e-31:644:118:1095 Response_reg#5
661-777 aa · 117 aa · 12.6% of protein
Raw token
Response_reg:661:3.46e-22:777:117:1116 Response_reg#6
804-921 aa · 118 aa · 12.7% of protein
Raw token
Response_reg:804:1.01e-28:921:118:111- Raw architecture: PAS:22:0.000099:140:119:113#PAS_3:301:0.00000000176:372:73:89#HisKA:414:2.33e-17:480:67:64#HATPase_c:527:1.44e-31:644:118:109#Response_reg:661:3.46e-22:777:117:111#Response_reg:804:1.01e-28:921:118:111
- Domain description: 1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001244405::NZ_LN865148.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span208659-211439Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001244405::NZ_LN865148.1::G00004Context members
BN1938_RS00975
Partner locus tags
BN1938_RS00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082202689.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN1938_RS00975Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN865148.1Sequence record reported by the local genomic context database.
Genomic interval208 659-211 439 nt2 781 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 659-211 439 ntGCF_001244405::NZ_LN865148.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001244405::NZ_LN865148.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN865148.1All displayed genes belong to this local TCS context.
Neighborhood span208 659-211 439 nt2 781 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 659 nt211 439 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN1938_RS00975GCF_001244405#BN1938_RS00975
HKHybridCurrent focus
208 659-211 439 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS00975The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0358517
Simplified PFAM architecture for HKOC_0358517
PFAM domain coverage: 477 / 926 aa (51.5%)
1 aa926 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[300-359] | HisKA[414-480] | HATPase_c[528-644] | Response_reg[661-776] | Response_reg[804-920]
- Domain count: 5
- Matched identifier: HKOC_0358517
- Positioned domains: PAS_3 300-359 ; HisKA 414-480 ; HATPase_c 528-644 ; Response_reg 661-776 ; Response_reg 804-920
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS00975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 658 112 · GCF_001244405
AssemblyEubacterium massiliense · Scaffoldhaploid
Genome composition5 156 194 bp · 46,0% GCEubacterium sp. SB2
Signal transduction countsGenes 200 · HK 99 · RR 97CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key