1 HAMP#1
276-344 aa · 69 aa · 12.1% of protein
Raw token
HAMP:276:0.000000000437:344:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN1938_RS03580
Histidine kinase, Classic
Eubacterium sp. SB2 · GCF_001244405
ClassHKTypeClassicLength568 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001244405#BN1938_RS03580Stable P2CS identifier used across views.
GenomeGCF_001244405Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length568 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage268 / 568 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa568 aa
Domain-by-domain annotation3 items
2 His_kinase#2
359-439 aa · 81 aa · 14.3% of protein
Raw token
His_kinase:359:2.58e-29:439:81:803 HATPase_c#3
450-567 aa · 118 aa · 20.8% of protein
Raw token
HATPase_c:450:0.000000000000291:567:118:109- Raw architecture: HAMP:276:0.000000000437:344:69:69#His_kinase:359:2.58e-29:439:81:80#HATPase_c:450:0.000000000000291:567:118:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001244405::NZ_LN865150.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52945-55934Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001244405::NZ_LN865150.1::G00023Context members
BN1938_RS03575BN1938_RS03580
Partner locus tags
BN1938_RS03575BN1938_RS03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_187376286.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN1938_RS03580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN865150.1Sequence record reported by the local genomic context database.
Genomic interval54 228-55 934 nt1 707 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 945-55 934 ntGCF_001244405::NZ_LN865150.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001244405::NZ_LN865150.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN865150.1All displayed genes belong to this local TCS context.
Neighborhood span52 945-55 934 nt2 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 945 nt55 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN1938_RS03575GCF_001244405#BN1938_RS03575
RRunclassified
52 945-54 204 nt · Reverse (-)
BN1938_RS03580GCF_001244405#BN1938_RS03580
HKClassicCurrent focus
54 228-55 934 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS03580The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1220763
Simplified PFAM architecture for HKOC_1220763
PFAM domain coverage: 249 / 568 aa (43.8%)
1 aa568 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[293-343] | His_kinase[359-439] | HATPase_c[451-567]
- Domain count: 3
- Matched identifier: HKOC_1220763
- Positioned domains: HAMP 293-343 ; His_kinase 359-439 ; HATPase_c 451-567
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS03580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 658 112 · GCF_001244405
AssemblyEubacterium massiliense · Scaffoldhaploid
Genome composition5 156 194 bp · 46,0% GCEubacterium sp. SB2
Signal transduction countsGenes 200 · HK 99 · RR 97CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key