1 Response_reg#1
207-284 aa · 78 aa · 26.5% of protein
Raw token
Response_reg:207:0.00000000000000302:284:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS12855
Response regulator, unclassified
Bacillus paranthracis · GCF_001117785
ClassRRTypeunclassifiedLength294 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001117785#AMO22_RS12855Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length294 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage78 / 294 aa (26.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa294 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:207:0.00000000000000302:284:78:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001117785::NZ_CMPU01000058.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14852-15736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_02586RefSeq proteinWP_000886124.1
Context group ID
GCF_001117785::NZ_CMPU01000058.1::G00030Context members
AMO22_RS12855
Partner locus tags
AMO22_RS12855
Partner old locus tags
ERS232495_02586
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000886124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS12855Primary locus identifier stored in the genes table.
Old locus tagERS232495_02586Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000058.1Sequence record reported by the local genomic context database.
Genomic interval14 852-15 736 nt885 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 852-15 736 ntGCF_001117785::NZ_CMPU01000058.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000058.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000058.1All displayed genes belong to this local TCS context.
Neighborhood span14 852-15 736 nt885 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 852 nt15 736 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMO22_RS12855GCF_001117785#AMO22_RS12855
RRunclassifiedCurrent focus
14 852-15 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000971535#OA45_RS19785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0582717
Simplified PFAM architecture for RROC_0582717
PFAM domain coverage: 91 / 294 aa (31.0%)
1 aa294 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[190-280]
- Domain count: 1
- Matched identifier: RROC_0582717
- Positioned domains: Response_reg 190-280 ; Response_reg 190-280
Cluster members and taxonomy
Representative gene: GCF_000971535#OA45_RS19785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key