1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.000000000000117:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS02690
Histidine kinase, Classic
Bacillus paranthracis · GCF_001117785
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001117785#AMO22_RS02690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 617 aa (39.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.00000000000000247:462:65:643 HATPase_c#3
506-613 aa · 108 aa · 17.5% of protein
Raw token
HATPase_c:506:1.47e-20:613:109:109- Raw architecture: HAMP:311:0.000000000000117:378:68:69#HisKA:398:0.00000000000000247:462:65:64#HATPase_c:506:1.47e-20:613:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001117785::NZ_CMPU01000007.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4572-7111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_00545RefSeq proteinWP_001225363.1
Context group ID
GCF_001117785::NZ_CMPU01000007.1::G00006Context members
AMO22_RS02690AMO22_RS02695
Partner locus tags
AMO22_RS02690AMO22_RS02695
Partner old locus tags
ERS232495_00545ERS232495_00546
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001225363.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9GUM3Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9GUM3_9BACIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS02690Primary locus identifier stored in the genes table.
Old locus tagERS232495_00545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000007.1Sequence record reported by the local genomic context database.
Genomic interval4 572-6 425 nt1 854 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 572-7 111 ntGCF_001117785::NZ_CMPU01000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span4 572-7 111 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 572 nt7 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMO22_RS02690GCF_001117785#AMO22_RS02690
HKClassicCurrent focus
4 572-6 425 nt · Reverse (-)
AMO22_RS02695GCF_001117785#AMO22_RS02695
RROmpR
6 422-7 111 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001117785#AMO22_RS02690The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982270
Simplified PFAM architecture for HKOC_0982270
PFAM domain coverage: 221 / 617 aa (35.8%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[508-613]
- Domain count: 3
- Matched identifier: HKOC_0982270
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 508-613
Cluster members and taxonomy
Representative gene: GCF_001117785#AMO22_RS02690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key