1 Hpt#1
4-96 aa · 93 aa · 13.9% of protein
Raw token
Hpt:4:1.4e-16:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS10485
Histidine kinase, CheA
Bacillus paranthracis · GCF_001117785
ClassHKTypeCheALength670 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001117785#AMO22_RS10485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length670 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 670 aa (63.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa670 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
287-346 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:287:0.00000000524:346:67:673 HATPase_c#3
394-533 aa · 140 aa · 20.9% of protein
Raw token
HATPase_c:394:1.35e-17:533:140:1094 CheW#4
538-670 aa · 133 aa · 19.9% of protein
Raw token
CheW:538:1.28e-21:670:139:138- Raw architecture: Hpt:4:1.4e-16:96:93:84#H-kinase_dim:287:0.00000000524:346:67:67#HATPase_c:394:1.35e-17:533:140:109#CheW:538:1.28e-21:670:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001117785::NZ_CMPU01000041.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17432-19941Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_02122RefSeq proteinWP_134197901.1
Context group ID
GCF_001117785::NZ_CMPU01000041.1::G00026Context members
AMO22_RS10485AMO22_RS10490
Partner locus tags
AMO22_RS10485AMO22_RS10490
Partner old locus tags
ERS232495_02122ERS232495_02123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_134197901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS10485Primary locus identifier stored in the genes table.
Old locus tagERS232495_02122Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000041.1Sequence record reported by the local genomic context database.
Genomic interval17 432-19 444 nt2 013 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 432-19 941 ntGCF_001117785::NZ_CMPU01000041.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000041.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000041.1All displayed genes belong to this local TCS context.
Neighborhood span17 432-19 941 nt2 510 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 432 nt19 941 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMO22_RS10485GCF_001117785#AMO22_RS10485
HKCheACurrent focus
17 432-19 444 nt · Reverse (-)
AMO22_RS10490GCF_001117785#AMO22_RS10490
RRCheY
19 573-19 941 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001117785#AMO22_RS10485The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0845457
Simplified PFAM architecture for HKOC_0845457
PFAM domain coverage: 509 / 670 aa (76.0%)
1 aa670 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[287-345] | HATPase_c[394-533] | CheW[539-670]
- Domain count: 5
- Matched identifier: HKOC_0845457
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 287-345 ; HATPase_c 394-533 ; CheW 539-670
Cluster members and taxonomy
Representative gene: GCF_001117785#AMO22_RS10485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key