1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:4.58e-23:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS07880
Histidine kinase, Classic
Bacillus paranthracis · GCF_001117785
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001117785#AMO22_RS07880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:0.00000000000000171:342:106:109- Raw architecture: HisKA_3:149:4.58e-23:216:68:68#HATPase_c:252:0.00000000000000171:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001117785::NZ_CMPU01000026.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23444-25128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_01582RefSeq proteinWP_000744320.1
Context group ID
GCF_001117785::NZ_CMPU01000026.1::G00020Context members
AMO22_RS07875AMO22_RS07880
Partner locus tags
AMO22_RS07875AMO22_RS07880
Partner old locus tags
ERS232495_01581ERS232495_01582
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000744320.1Primary protein accession used for annex mappings.
UniProt accessionA0A1J9YML9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1J9YML9_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS07880Primary locus identifier stored in the genes table.
Old locus tagERS232495_01582Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000026.1Sequence record reported by the local genomic context database.
Genomic interval24 073-25 128 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 444-25 128 ntGCF_001117785::NZ_CMPU01000026.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000026.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000026.1All displayed genes belong to this local TCS context.
Neighborhood span23 444-25 128 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 444 nt25 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMO22_RS07875GCF_001117785#AMO22_RS07875
RRNarL
23 444-24 076 nt · Reverse (-)
AMO22_RS07880GCF_001117785#AMO22_RS07880
HKClassicCurrent focus
24 073-25 128 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000971535#OA45_RS01200Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2793023
Simplified PFAM architecture for HKOC_2793023
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2793023
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_000971535#OA45_RS01200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key