1 PAS_9#1
92-183 aa · 92 aa · 21.7% of protein
Raw token
PAS_9:92:0.0000000000579:183:98:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS07785
Histidine kinase, Classic
Bacillus paranthracis · GCF_001117785
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001117785#AMO22_RS07785Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 423 aa (60.3%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation3 items
2 HisKA#2
198-257 aa · 60 aa · 14.2% of protein
Raw token
HisKA:198:0.0000000000266:257:60:643 HATPase_c#3
307-409 aa · 103 aa · 24.3% of protein
Raw token
HATPase_c:307:1.26e-26:409:107:109- Raw architecture: PAS_9:92:0.0000000000579:183:98:102#HisKA:198:0.0000000000266:257:60:64#HATPase_c:307:1.26e-26:409:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001117785::NZ_CMPU01000026.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6055-7326Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_01562RefSeq proteinWP_000937008.1
Context group ID
GCF_001117785::NZ_CMPU01000026.1::G00019Context members
AMO22_RS07785
Partner locus tags
AMO22_RS07785
Partner old locus tags
ERS232495_01562
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000937008.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9H194Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9H194_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS07785Primary locus identifier stored in the genes table.
Old locus tagERS232495_01562Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000026.1Sequence record reported by the local genomic context database.
Genomic interval6 055-7 326 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 055-7 326 ntGCF_001117785::NZ_CMPU01000026.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000026.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000026.1All displayed genes belong to this local TCS context.
Neighborhood span6 055-7 326 nt1 272 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 055 nt7 326 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AMO22_RS07785GCF_001117785#AMO22_RS07785
HKClassicCurrent focus
6 055-7 326 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001117785#AMO22_RS07785The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2236231
Simplified PFAM architecture for HKOC_2236231
PFAM domain coverage: 252 / 423 aa (59.6%)
1 aa423 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[95-181] | HisKA[198-258] | HATPase_c[307-410]
- Domain count: 3
- Matched identifier: HKOC_2236231
- Positioned domains: PAS_9 95-181 ; HisKA 198-258 ; HATPase_c 307-410
Cluster members and taxonomy
Representative gene: GCF_001117785#AMO22_RS07785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key