1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:1.52e-16:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AMO22_RS04055
Histidine kinase, Classic
Bacillus paranthracis · GCF_001117785
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001117785#AMO22_RS04055Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:6.17e-16:319:65:643 HATPase_c#3
367-476 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:367:1.59e-30:476:110:109- Raw architecture: HAMP:174:1.52e-16:243:70:69#HisKA:255:6.17e-16:319:65:64#HATPase_c:367:1.59e-30:476:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001117785::NZ_CMPU01000011.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17812-19957Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS232495_00819RefSeq proteinWP_000023851.1
Context group ID
GCF_001117785::NZ_CMPU01000011.1::G00012Context members
AMO22_RS04055AMO22_RS04060
Partner locus tags
AMO22_RS04055AMO22_RS04060
Partner old locus tags
ERS232495_00819ERS232495_00820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000023851.1Primary protein accession used for annex mappings.
UniProt accessionQ6HCL0Primary UniProt accession resolved in the annex database.
UniProt IDQ6HCL0_BACHKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAMO22_RS04055Primary locus identifier stored in the genes table.
Old locus tagERS232495_00819Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CMPU01000011.1Sequence record reported by the local genomic context database.
Genomic interval17 812-19 266 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 812-19 957 ntGCF_001117785::NZ_CMPU01000011.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001117785::NZ_CMPU01000011.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CMPU01000011.1All displayed genes belong to this local TCS context.
Neighborhood span17 812-19 957 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 812 nt19 957 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AMO22_RS04055GCF_001117785#AMO22_RS04055
HKClassicCurrent focus
17 812-19 266 nt · Forward (+)
AMO22_RS04060GCF_001117785#AMO22_RS04060
RROmpR
19 268-19 957 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008505#BT9727_RS22985Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1583993
Simplified PFAM architecture for HKOC_1583993
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1583993
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000008505#BT9727_RS22985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_001117785
Assembly9803_7#66 · Scaffoldhaploid
Genome composition5 641 962 bp · 35,5% GCBacillus paranthracis
Signal transduction countsGenes 83 · HK 42 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key