1 HisKA#1
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000329:298:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS20820
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS20820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 453 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-451 aa · 108 aa · 23.8% of protein
Raw token
HATPase_c:344:2.67e-20:451:108:109- Raw architecture: HisKA:234:0.0000000000329:298:65:64#HATPase_c:344:2.67e-20:451:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000044.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66863-68874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_20835RefSeq proteinWP_048545939.1
Context group ID
GCF_001044745::NZ_LABO01000044.1::G00058Context members
TU65_RS20820TU65_RS20825
Partner locus tags
TU65_RS20820TU65_RS20825
Partner old locus tags
TU65_20835TU65_20840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048545939.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS20820Primary locus identifier stored in the genes table.
Old locus tagTU65_20835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000044.1Sequence record reported by the local genomic context database.
Genomic interval66 863-68 224 nt1 362 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 863-68 874 ntGCF_001044745::NZ_LABO01000044.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000044.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000044.1All displayed genes belong to this local TCS context.
Neighborhood span66 863-68 874 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 863 nt68 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS20820GCF_001044745#TU65_RS20820
HKClassicCurrent focus
66 863-68 224 nt · Reverse (-)
TU65_RS20825GCF_001044745#TU65_RS20825
RROmpR
68 212-68 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS20820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1926145
Simplified PFAM architecture for HKOC_1926145
PFAM domain coverage: 172 / 453 aa (38.0%)
1 aa453 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1926145
- Positioned domains: HisKA 234-297 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS20820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key