1 HAMP#1
164-226 aa · 63 aa · 13.8% of protein
Raw token
HAMP:164:0.000000000000199:226:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS13355
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS13355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-296 aa · 67 aa · 14.7% of protein
Raw token
HisKA:230:0.000000000000391:296:67:643 HATPase_c#3
340-452 aa · 113 aa · 24.8% of protein
Raw token
HATPase_c:340:7.98e-32:452:113:109- Raw architecture: HAMP:164:0.000000000000199:226:63:69#HisKA:230:0.000000000000391:296:67:64#HATPase_c:340:7.98e-32:452:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000035.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25659-27697Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_13365RefSeq proteinWP_048543761.1
Context group ID
GCF_001044745::NZ_LABO01000035.1::G00040Context members
TU65_RS13355TU65_RS13360
Partner locus tags
TU65_RS13355TU65_RS13360
Partner old locus tags
TU65_13365TU65_13370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048543761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS13355Primary locus identifier stored in the genes table.
Old locus tagTU65_13365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000035.1Sequence record reported by the local genomic context database.
Genomic interval25 659-27 026 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 659-27 697 ntGCF_001044745::NZ_LABO01000035.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000035.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000035.1All displayed genes belong to this local TCS context.
Neighborhood span25 659-27 697 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 659 nt27 697 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS13355GCF_001044745#TU65_RS13355
HKClassicCurrent focus
25 659-27 026 nt · Reverse (-)
TU65_RS13360GCF_001044745#TU65_RS13360
RROmpR
27 023-27 697 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS13355The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1900687
Simplified PFAM architecture for HKOC_1900687
PFAM domain coverage: 225 / 455 aa (49.5%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[179-226] | HisKA[230-295] | HATPase_c[341-451]
- Domain count: 3
- Matched identifier: HKOC_1900687
- Positioned domains: HAMP 179-226 ; HisKA 230-295 ; HATPase_c 341-451
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS13355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key