1 HisKA_3#1
400-464 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:400:2.96e-18:464:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU65_RS03705
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044745
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001044745#TU65_RS03705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 607 aa (26.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
506-600 aa · 95 aa · 15.7% of protein
Raw token
HATPase_c:506:0.0000000000000309:600:105:109- Raw architecture: HisKA_3:400:2.96e-18:464:65:68#HATPase_c:506:0.0000000000000309:600:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001044745::NZ_LABO01000011.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span101000-103466Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU65_03705RefSeq proteinWP_048541706.1
Context group ID
GCF_001044745::NZ_LABO01000011.1::G00013Context members
TU65_RS03705TU65_RS03710
Partner locus tags
TU65_RS03705TU65_RS03710
Partner old locus tags
TU65_03705TU65_03710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048541706.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5G1A1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5G1A1_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU65_RS03705Primary locus identifier stored in the genes table.
Old locus tagTU65_03705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LABO01000011.1Sequence record reported by the local genomic context database.
Genomic interval101 000-102 823 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span101 000-103 466 ntGCF_001044745::NZ_LABO01000011.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044745::NZ_LABO01000011.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LABO01000011.1All displayed genes belong to this local TCS context.
Neighborhood span101 000-103 466 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
101 000 nt103 466 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TU65_RS03705GCF_001044745#TU65_RS03705
HKClassicCurrent focus
101 000-102 823 nt · Forward (+)
TU65_RS03710GCF_001044745#TU65_RS03710
RRNarL
102 825-103 466 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS03705The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1019116
Simplified PFAM architecture for HKOC_1019116
PFAM domain coverage: 160 / 607 aa (26.4%)
1 aa607 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[400-464] | HATPase_c[507-601]
- Domain count: 2
- Matched identifier: HKOC_1019116
- Positioned domains: HisKA_3 400-464 ; HATPase_c 507-601
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS03705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044745
AssemblyASM104474v1 · Scaffoldhaploid
Genome composition5 414 722 bp · 35,5% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key