1 HisKA#1
193-248 aa · 56 aa · 13.4% of protein
Raw token
HisKA:193:0.00000000409:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TU50_RS05430
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001044575
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001044575#TU50_RS05430Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 418 aa (39.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-403 aa · 108 aa · 25.8% of protein
Raw token
HATPase_c:296:1e-17:403:111:109- Raw architecture: HisKA:193:0.00000000409:248:57:64#HATPase_c:296:1e-17:403:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001044575::NZ_JYPF01000001.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1007983-1009239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTU50_05440RefSeq proteinWP_048565809.1
Context group ID
GCF_001044575::NZ_JYPF01000001.1::G00035Context members
TU50_RS05430
Partner locus tags
TU50_RS05430
Partner old locus tags
TU50_05440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048565809.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B6F727Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B6F727_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTU50_RS05430Primary locus identifier stored in the genes table.
Old locus tagTU50_05440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYPF01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 007 983-1 009 239 nt1 257 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 007 983-1 009 239 ntGCF_001044575::NZ_JYPF01000001.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001044575::NZ_JYPF01000001.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYPF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 007 983-1 009 239 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 007 983 nt1 009 239 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TU50_RS05430GCF_001044575#TU50_RS05430
HKClassicCurrent focus
1 007 983-1 009 239 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044575#TU50_RS05430The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285693
Simplified PFAM architecture for HKOC_2285693
PFAM domain coverage: 320 / 418 aa (76.6%)
1 aa418 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-402]
- Domain count: 3
- Matched identifier: HKOC_2285693
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-402
Cluster members and taxonomy
Representative gene: GCF_001044575#TU50_RS05430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001044575
AssemblyASM104457v1 · Scaffoldhaploid
Genome composition5 523 305 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key