1 HisKA#1
163-225 aa · 63 aa · 15.9% of protein
Raw token
HisKA:163:0.000000003:225:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBKW_RS02940
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 · GCF_001042615
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001042615#BBKW_RS02940Stable P2CS identifier used across views.
GenomeGCF_001042615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 395 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
269-393 aa · 125 aa · 31.6% of protein
Raw token
HATPase_c:269:2.39e-20:393:125:109- Raw architecture: HisKA:163:0.000000003:225:65:64#HATPase_c:269:2.39e-20:393:125:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001042615::NZ_AP012327.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span686726-688569Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBKW_0581RefSeq proteinWP_033501388.1
Context group ID
GCF_001042615::NZ_AP012327.1::G00005Context members
BBKW_RS02940BBKW_RS02945
Partner locus tags
BBKW_RS02940BBKW_RS02945
Partner old locus tags
BBKW_0581
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033501388.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBKW_RS02940Primary locus identifier stored in the genes table.
Old locus tagBBKW_0581Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012327.1Sequence record reported by the local genomic context database.
Genomic interval686 726-687 913 nt1 188 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span686 726-688 569 ntGCF_001042615::NZ_AP012327.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001042615::NZ_AP012327.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012327.1All displayed genes belong to this local TCS context.
Neighborhood span686 726-688 569 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
686 726 nt688 569 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBKW_RS02940GCF_001042615#BBKW_RS02940
HKClassicCurrent focus
686 726-687 913 nt · Reverse (-)
BBKW_RS02945GCF_001042615#BBKW_RS02945
RROmpR
687 976-688 569 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029911415#OB936_RS03245Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2297899
Simplified PFAM architecture for HKOC_2297899
PFAM domain coverage: 189 / 417 aa (45.3%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-247] | HATPase_c[291-415]
- Domain count: 2
- Matched identifier: HKOC_2297899
- Positioned domains: HisKA 184-247 ; HATPase_c 291-415
Cluster members and taxonomy
Representative gene: GCF_029911415#OB936_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 460 · GCF_001042615
AssemblyASM104261v1 · Complete Genomehaploid
Genome composition2 337 234 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key