1 Response_reg#1
10-123 aa · 114 aa · 50.0% of protein
Raw token
Response_reg:10:1.11e-16:123:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBKW_RS02040
Response regulator NarL family
Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854 · GCF_001042615
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001042615#BBKW_RS02040Stable P2CS identifier used across views.
GenomeGCF_001042615Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 228 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-222 aa · 58 aa · 25.4% of protein
Raw token
HTH_LUXR:165:7.65e-27:222:58:58- Raw architecture: Response_reg:10:1.11e-16:123:114:111#HTH_LUXR:165:7.65e-27:222:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001042615::NZ_AP012327.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span486238-486924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBKW_0402RefSeq proteinWP_033500863.1
Context group ID
GCF_001042615::NZ_AP012327.1::G00004Context members
BBKW_RS02040
Partner locus tags
BBKW_RS02040
Partner old locus tags
BBKW_0402
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033500863.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1P9B3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1P9B3_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBKW_RS02040Primary locus identifier stored in the genes table.
Old locus tagBBKW_0402Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012327.1Sequence record reported by the local genomic context database.
Genomic interval486 238-486 924 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span486 238-486 924 ntGCF_001042615::NZ_AP012327.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001042615::NZ_AP012327.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012327.1All displayed genes belong to this local TCS context.
Neighborhood span486 238-486 924 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
486 238 nt486 924 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BBKW_RS02040GCF_001042615#BBKW_RS02040
RRNarLCurrent focus
486 238-486 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741605#BKAS_RS04030Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1306371
Simplified PFAM architecture for RROC_1306371
PFAM domain coverage: 169 / 228 aa (74.1%)
1 aa228 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[10-122] | GerE[167-222]
- Domain count: 2
- Matched identifier: RROC_1306371
- Positioned domains: Response_reg 10-122 ; Response_reg 10-122 ; GerE 167-222 ; GerE 167-222
Cluster members and taxonomy
Representative gene: GCF_000741605#BKAS_RS04030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 460 · GCF_001042615
AssemblyASM104261v1 · Complete Genomehaploid
Genome composition2 337 234 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key