1 HAMP#1
205-274 aa · 70 aa · 12.6% of protein
Raw token
HAMP:205:0.0000000000000361:274:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBPC_RS03285
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 · GCF_001025215
ClassHKTypeClassicLength556 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001025215#BBPC_RS03285Stable P2CS identifier used across views.
GenomeGCF_001025215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 556 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation3 items
2 HisKA#2
285-352 aa · 68 aa · 12.2% of protein
Raw token
HisKA:285:0.00000000000000819:352:68:643 HATPase_c#3
399-509 aa · 111 aa · 20.0% of protein
Raw token
HATPase_c:399:5.48e-30:509:111:109- Raw architecture: HAMP:205:0.0000000000000361:274:70:69#HisKA:285:0.00000000000000819:352:68:64#HATPase_c:399:5.48e-30:509:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001025215::NZ_AP012330.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span795873-798291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBPC_0647RefSeq proteinWP_231857845.1
Context group ID
GCF_001025215::NZ_AP012330.1::G00007Context members
BBPC_RS03280BBPC_RS03285
Partner locus tags
BBPC_RS03280BBPC_RS03285
Partner old locus tags
BBPC_0646BBPC_0647
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231857845.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBPC_RS03285Primary locus identifier stored in the genes table.
Old locus tagBBPC_0647Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012330.1Sequence record reported by the local genomic context database.
Genomic interval796 621-798 291 nt1 671 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span795 873-798 291 ntGCF_001025215::NZ_AP012330.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001025215::NZ_AP012330.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012330.1All displayed genes belong to this local TCS context.
Neighborhood span795 873-798 291 nt2 419 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
795 873 nt798 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBPC_RS03280GCF_001025215#BBPC_RS03280
RROmpR
795 873-796 607 nt · Forward (+)
BBPC_RS03285GCF_001025215#BBPC_RS03285
HKClassicCurrent focus
796 621-798 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771445#OU14_RS06700Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1265046
Simplified PFAM architecture for HKOC_1265046
PFAM domain coverage: 229 / 558 aa (41.0%)
1 aa558 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[224-275] | HisKA[288-354] | HATPase_c[401-510]
- Domain count: 3
- Matched identifier: HKOC_1265046
- Positioned domains: HAMP 224-275 ; HisKA 288-354 ; HATPase_c 401-510
Cluster members and taxonomy
Representative gene: GCF_000771445#OU14_RS06700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 547 043 · GCF_001025215
AssemblyASM102521v1 · Complete Genomereference genome · haploid
Genome composition2 313 752 bp · 56,5% GCBifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
Signal transduction countsGenes 28 · HK 11 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key