1 HisKA#1
190-255 aa · 66 aa · 14.5% of protein
Raw token
HisKA:190:0.00000000000661:255:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BBPC_RS01435
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 · GCF_001025215
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001025215#BBPC_RS01435Stable P2CS identifier used across views.
GenomeGCF_001025215Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 454 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-427 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:318:2.29e-29:427:110:109- Raw architecture: HisKA:190:0.00000000000661:255:66:64#HATPase_c:318:2.29e-29:427:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001025215::NZ_AP012330.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span375366-377517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBBPC_0286RefSeq proteinWP_004220078.1
Context group ID
GCF_001025215::NZ_AP012330.1::G00002Context members
BBPC_RS01435BBPC_RS01440
Partner locus tags
BBPC_RS01435BBPC_RS01440
Partner old locus tags
BBPC_0286BBPC_0287
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004220078.1Primary protein accession used for annex mappings.
UniProt accessionC0BQN9Primary UniProt accession resolved in the annex database.
UniProt IDC0BQN9_BIFPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBBPC_RS01435Primary locus identifier stored in the genes table.
Old locus tagBBPC_0286Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP012330.1Sequence record reported by the local genomic context database.
Genomic interval375 366-376 730 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span375 366-377 517 ntGCF_001025215::NZ_AP012330.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001025215::NZ_AP012330.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP012330.1All displayed genes belong to this local TCS context.
Neighborhood span375 366-377 517 nt2 152 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
375 366 nt377 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BBPC_RS01435GCF_001025215#BBPC_RS01435
HKClassicCurrent focus
375 366-376 730 nt · Forward (+)
BBPC_RS01440GCF_001025215#BBPC_RS01440
RROmpR
376 813-377 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000173435#BIFPSEUDO_RS01720Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1912123
Simplified PFAM architecture for HKOC_1912123
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-255] | HATPase_c[319-429]
- Domain count: 2
- Matched identifier: HKOC_1912123
- Positioned domains: HisKA 190-255 ; HATPase_c 319-429
Cluster members and taxonomy
Representative gene: GCF_000173435#BIFPSEUDO_RS01720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 547 043 · GCF_001025215
AssemblyASM102521v1 · Complete Genomereference genome · haploid
Genome composition2 313 752 bp · 56,5% GCBifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
Signal transduction countsGenes 28 · HK 11 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key