1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:8.22e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OA45_RS05605
Response regulator OmpR family
Bacillus sp. UMTAT18 · GCF_000971535
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000971535#OA45_RS05605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:2.57e-31:230:77:77- Raw architecture: Response_reg:6:8.22e-38:115:111:111#Trans_reg_C:154:2.57e-31:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000971535::NZ_JSFD01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1116391-1118146Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOA45_01148RefSeq proteinWP_046197685.1
Context group ID
GCF_000971535::NZ_JSFD01000001.1::G00014Context members
OA45_RS05600OA45_RS05605
Partner locus tags
OA45_RS05600OA45_RS05605
Partner old locus tags
OA45_01147OA45_01148
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_046197685.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOA45_RS05605Primary locus identifier stored in the genes table.
Old locus tagOA45_01148Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JSFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 117 448-1 118 146 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 116 391-1 118 146 ntGCF_000971535::NZ_JSFD01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000971535::NZ_JSFD01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JSFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 116 391-1 118 146 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 116 391 nt1 118 146 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OA45_RS05600GCF_000971535#OA45_RS05600
HKClassic
1 116 391-1 117 458 nt · Reverse (-)
OA45_RS05605GCF_000971535#OA45_RS05605
RROmpRCurrent focus
1 117 448-1 118 146 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000971535#OA45_RS05605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1123480
Simplified PFAM architecture for RROC_1123480
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1123480
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000971535#OA45_RS05605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 565 146 · GCF_000971535
AssemblyASM97153v1 · Contighaploid
Genome composition5 479 367 bp · 35,0% GCBacillus sp. UMTAT18
Signal transduction countsGenes 98 · HK 50 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key