1 HisKA#1
188-248 aa · 61 aa · 14.9% of protein
Raw token
HisKA:188:0.000000000000253:248:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OA45_RS00725
Histidine kinase, Classic
Bacillus sp. UMTAT18 · GCF_000971535
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000971535#OA45_RS00725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 410 aa (40.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-406 aa · 105 aa · 25.6% of protein
Raw token
HATPase_c:302:1.33e-24:406:108:109- Raw architecture: HisKA:188:0.000000000000253:248:61:64#HATPase_c:302:1.33e-24:406:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000971535::NZ_JSFD01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span147496-148728Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOA45_00151RefSeq proteinWP_046197211.1
Context group ID
GCF_000971535::NZ_JSFD01000001.1::G00003Context members
OA45_RS00725
Partner locus tags
OA45_RS00725
Partner old locus tags
OA45_00151
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_046197211.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOA45_RS00725Primary locus identifier stored in the genes table.
Old locus tagOA45_00151Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JSFD01000001.1Sequence record reported by the local genomic context database.
Genomic interval147 496-148 728 nt1 233 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span147 496-148 728 ntGCF_000971535::NZ_JSFD01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000971535::NZ_JSFD01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JSFD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span147 496-148 728 nt1 233 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 496 nt148 728 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OA45_RS00725GCF_000971535#OA45_RS00725
HKClassicCurrent focus
147 496-148 728 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000971535#OA45_RS00725The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2354816
Simplified PFAM architecture for HKOC_2354816
PFAM domain coverage: 316 / 410 aa (77.1%)
1 aa410 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[14-165] | HisKA[188-248] | HATPase_c[304-406]
- Domain count: 3
- Matched identifier: HKOC_2354816
- Positioned domains: 5TM-5TMR_LYT 14-165 ; HisKA 188-248 ; HATPase_c 304-406
Cluster members and taxonomy
Representative gene: GCF_000971535#OA45_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 565 146 · GCF_000971535
AssemblyASM97153v1 · Contighaploid
Genome composition5 479 367 bp · 35,0% GCBacillus sp. UMTAT18
Signal transduction countsGenes 98 · HK 50 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key