1 HisKA_3#1
194-258 aa · 65 aa · 16.4% of protein
Raw token
HisKA_3:194:4.83e-20:258:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SZ39_RS11130
Histidine kinase, Classic
Bacillus mycoides · GCF_000931375
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000931375#SZ39_RS11130Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 397 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa397 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
300-388 aa · 89 aa · 22.4% of protein
Raw token
HATPase_c:300:0.0000000000000589:388:107:109- Raw architecture: HisKA_3:194:4.83e-20:258:65:68#HATPase_c:300:0.0000000000000589:388:107:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000931375::NZ_JYFS01000046.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span57296-59142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSZ39_2331RefSeq proteinWP_000902013.1
Context group ID
GCF_000931375::NZ_JYFS01000046.1::G00024Context members
SZ39_RS11130SZ39_RS11135
Partner locus tags
SZ39_RS11130SZ39_RS11135
Partner old locus tags
SZ39_2331SZ39_2332
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000902013.1Primary protein accession used for annex mappings.
UniProt accessionR8CH41Primary UniProt accession resolved in the annex database.
UniProt IDR8CH41_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSZ39_RS11130Primary locus identifier stored in the genes table.
Old locus tagSZ39_2331Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYFS01000046.1Sequence record reported by the local genomic context database.
Genomic interval57 296-58 489 nt1 194 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span57 296-59 142 ntGCF_000931375::NZ_JYFS01000046.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000931375::NZ_JYFS01000046.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFS01000046.1All displayed genes belong to this local TCS context.
Neighborhood span57 296-59 142 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 296 nt59 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SZ39_RS11130GCF_000931375#SZ39_RS11130
HKClassicCurrent focus
57 296-58 489 nt · Forward (+)
SZ39_RS11135GCF_000931375#SZ39_RS11135
RRNarL
58 486-59 142 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS01040Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2469849
Simplified PFAM architecture for HKOC_2469849
PFAM domain coverage: 153 / 397 aa (38.5%)
1 aa397 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[194-259] | HATPase_c[301-387]
- Domain count: 2
- Matched identifier: HKOC_2469849
- Positioned domains: HisKA_3 194-259 ; HATPase_c 301-387
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS01040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000931375
AssemblyASM93137v1 · Scaffoldhaploid
Genome composition5 785 403 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key