1 PAS_9#1
92-183 aa · 92 aa · 22.1% of protein
Raw token
PAS_9:92:0.0000000000133:183:98:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SZ39_RS01610
Histidine kinase, Classic
Bacillus mycoides · GCF_000931375
ClassHKTypeClassicLength416 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000931375#SZ39_RS01610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length416 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 416 aa (61.3%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa416 aa
Domain-by-domain annotation3 items
2 HisKA#2
198-257 aa · 60 aa · 14.4% of protein
Raw token
HisKA:198:0.0000000000165:257:60:643 HATPase_c#3
307-409 aa · 103 aa · 24.8% of protein
Raw token
HATPase_c:307:2.01e-27:409:107:109- Raw architecture: PAS_9:92:0.0000000000133:183:98:102#HisKA:198:0.0000000000165:257:60:64#HATPase_c:307:2.01e-27:409:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000931375::NZ_JYFS01000003.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span300153-301403Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSZ39_0338RefSeq proteinWP_044437998.1
Context group ID
GCF_000931375::NZ_JYFS01000003.1::G00029Context members
SZ39_RS01610
Partner locus tags
SZ39_RS01610
Partner old locus tags
SZ39_0338
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044437998.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSZ39_RS01610Primary locus identifier stored in the genes table.
Old locus tagSZ39_0338Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JYFS01000003.1Sequence record reported by the local genomic context database.
Genomic interval300 153-301 403 nt1 251 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span300 153-301 403 ntGCF_000931375::NZ_JYFS01000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000931375::NZ_JYFS01000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span300 153-301 403 nt1 251 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
300 153 nt301 403 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SZ39_RS01610GCF_000931375#SZ39_RS01610
HKClassicCurrent focus
300 153-301 403 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000931375#SZ39_RS01610The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2302803
Simplified PFAM architecture for HKOC_2302803
PFAM domain coverage: 253 / 416 aa (60.8%)
1 aa416 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[95-182] | HisKA[198-258] | HATPase_c[307-410]
- Domain count: 3
- Matched identifier: HKOC_2302803
- Positioned domains: PAS_9 95-182 ; HisKA 198-258 ; HATPase_c 307-410
Cluster members and taxonomy
Representative gene: GCF_000931375#SZ39_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000931375
AssemblyASM93137v1 · Scaffoldhaploid
Genome composition5 785 403 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key