1 Response_reg#1
2-109 aa · 108 aa · 92.3% of protein
Raw token
Response_reg:2:1.28e-25:109:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS18895
Response regulator, CheY family
Anaerostipes hadrus · GCF_000876135
ClassRRTypeCheYLength117 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000876135#TZ59_RS18895Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length117 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 117 aa (92.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa117 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:2:1.28e-25:109:108:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000876135::NZ_JYFK01000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14707-17861Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000003.1::G00002Context members
TZ59_RS18895TZ59_RS01710
Partner locus tags
TZ59_RS18895TZ59_RS01710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242844363.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS18895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000003.1Sequence record reported by the local genomic context database.
Genomic interval14 707-15 060 nt354 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 707-17 861 ntGCF_000876135::NZ_JYFK01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span14 707-17 861 nt3 155 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 707 nt17 861 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TZ59_RS18895GCF_000876135#TZ59_RS18895
RRCheYCurrent focus
14 707-15 060 nt · Reverse (-)
TZ59_RS01710GCF_000876135#TZ59_RS01710
HKClassic
15 087-17 861 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS18895The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2460831
Simplified PFAM architecture for RROC_2460831
PFAM domain coverage: 107 / 117 aa (91.5%)
1 aa117 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-108]
- Domain count: 1
- Matched identifier: RROC_2460831
- Positioned domains: Response_reg 2-108 ; Response_reg 2-108
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS18895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key