1 HisKA#1
190-252 aa · 63 aa · 15.5% of protein
Raw token
HisKA:190:0.00000000000499:252:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TZ59_RS16815
Histidine kinase, Classic
Anaerostipes hadrus · GCF_000876135
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000876135#TZ59_RS16815Stable P2CS identifier used across views.
GenomeGCF_000876135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 407 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-407 aa · 111 aa · 27.3% of protein
Raw token
HATPase_c:297:2.59e-25:407:111:109- Raw architecture: HisKA:190:0.00000000000499:252:64:64#HATPase_c:297:2.59e-25:407:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000876135::NZ_JYFK01000081.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1993-3216Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000876135::NZ_JYFK01000081.1::G00026Context members
TZ59_RS16815
Partner locus tags
TZ59_RS16815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044925445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTZ59_RS16815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JYFK01000081.1Sequence record reported by the local genomic context database.
Genomic interval1 993-3 216 nt1 224 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 993-3 216 ntGCF_000876135::NZ_JYFK01000081.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000876135::NZ_JYFK01000081.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JYFK01000081.1All displayed genes belong to this local TCS context.
Neighborhood span1 993-3 216 nt1 224 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 993 nt3 216 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TZ59_RS16815GCF_000876135#TZ59_RS16815
HKClassicCurrent focus
1 993-3 216 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS16815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380470
Simplified PFAM architecture for HKOC_2380470
PFAM domain coverage: 172 / 407 aa (42.3%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-252] | HATPase_c[297-406]
- Domain count: 2
- Matched identifier: HKOC_2380470
- Positioned domains: HisKA 191-252 ; HATPase_c 297-406
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS16815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_000876135
AssemblyASM87613v1 · Contighaploid
Genome composition3 542 561 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key