1 Response_reg#1
4-113 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:4:9.6e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AS84_RS04940
Response regulator OmpR family
Francisella tularensis subsp. novicida F6168 · GCF_000833165
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000833165#AS84_RS04940Stable P2CS identifier used across views.
GenomeGCF_000833165Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 241 aa (74.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 29.0% of protein
Raw token
Trans_reg_C:150:0.0000000000000101:219:72:77- Raw architecture: Response_reg:4:9.6e-35:113:111:111#Trans_reg_C:150:0.0000000000000101:219:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000833165::NZ_CP009353.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1034675-1035400Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAS84_1000RefSeq proteinWP_003034881.1
Context group ID
GCF_000833165::NZ_CP009353.1::G00003Context members
AS84_RS04940
Partner locus tags
AS84_RS04940
Partner old locus tags
AS84_1000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_003034881.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAS84_RS04940Primary locus identifier stored in the genes table.
Old locus tagAS84_1000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP009353.1Sequence record reported by the local genomic context database.
Genomic interval1 034 675-1 035 400 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 034 675-1 035 400 ntGCF_000833165::NZ_CP009353.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000833165::NZ_CP009353.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP009353.1All displayed genes belong to this local TCS context.
Neighborhood span1 034 675-1 035 400 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 034 675 nt1 035 400 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AS84_RS04940GCF_000833165#AS84_RS04940
RROmpRCurrent focus
1 034 675-1 035 400 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154185#FTCG_RS01035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862773
Simplified PFAM architecture for RROC_0862773
PFAM domain coverage: 181 / 241 aa (75.1%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_0862773
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000154185#FTCG_RS01035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 452 728 · GCF_000833165
AssemblyASM83316v1 · Complete Genomehaploid
Genome composition1 927 240 bp · 32,5% GCFrancisella tularensis subsp. novicida F6168
Signal transduction countsGenes 8 · HK 4 · RR 4CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key