1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:1.98e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AS84_RS03815
Response regulator OmpR family
Francisella tularensis subsp. novicida F6168 · GCF_000833165
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000833165#AS84_RS03815Stable P2CS identifier used across views.
GenomeGCF_000833165Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:149:8.13e-22:224:77:77- Raw architecture: Response_reg:5:1.98e-29:114:111:111#Trans_reg_C:149:8.13e-22:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000833165::NZ_CP009353.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span790291-793700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAS84_774RefSeq proteinWP_004339064.1
Context group ID
GCF_000833165::NZ_CP009353.1::G00001Context members
AS84_RS03810AS84_RS03815
Partner locus tags
AS84_RS03810AS84_RS03815
Partner old locus tags
AS84_773AS84_774
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004339064.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAS84_RS03815Primary locus identifier stored in the genes table.
Old locus tagAS84_774Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP009353.1Sequence record reported by the local genomic context database.
Genomic interval793 014-793 700 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span790 291-793 700 ntGCF_000833165::NZ_CP009353.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000833165::NZ_CP009353.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP009353.1All displayed genes belong to this local TCS context.
Neighborhood span790 291-793 700 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
790 291 nt793 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AS84_RS03810GCF_000833165#AS84_RS03810
HKClassic
790 291-792 972 nt · Forward (+)
AS84_RS03815GCF_000833165#AS84_RS03815
RROmpRCurrent focus
793 014-793 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154185#FTCG_RS00035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302081
Simplified PFAM architecture for RROC_1302081
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[150-224]
- Domain count: 2
- Matched identifier: RROC_1302081
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 150-224 ; Trans_reg_C 150-224
Cluster members and taxonomy
Representative gene: GCF_000154185#FTCG_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 452 728 · GCF_000833165
AssemblyASM83316v1 · Complete Genomehaploid
Genome composition1 927 240 bp · 32,5% GCFrancisella tularensis subsp. novicida F6168
Signal transduction countsGenes 8 · HK 4 · RR 4CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key