1 Response_reg#1
6-120 aa · 115 aa · 55.8% of protein
Raw token
Response_reg:6:2.75e-18:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN2378_RS05435
Response regulator NarL family
Clostridioides difficile · GCF_000826625
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000826625#BN2378_RS05435Stable P2CS identifier used across views.
GenomeGCF_000826625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 206 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
140-196 aa · 57 aa · 27.7% of protein
Raw token
HTH_LUXR:140:2.12e-17:196:57:58- Raw architecture: Response_reg:6:2.75e-18:120:116:111#HTH_LUXR:140:2.12e-17:196:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000826625::NZ_CDND01000001.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1282282-1282902Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUA13_RS05430RefSeq proteinWP_012816393.1
Context group ID
GCF_000826625::NZ_CDND01000001.1::G00015Context members
BN2378_RS05435
Partner locus tags
BN2378_RS05435
Partner old locus tags
UA13_RS05430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012816393.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NB23Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NB23_CLODCDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN2378_RS05435Primary locus identifier stored in the genes table.
Old locus tagUA13_RS05430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CDND01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 282 282-1 282 902 nt621 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 282 282-1 282 902 ntGCF_000826625::NZ_CDND01000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000826625::NZ_CDND01000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CDND01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 282 282-1 282 902 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 282 282 nt1 282 902 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN2378_RS05435GCF_000826625#BN2378_RS05435
RRNarLCurrent focus
1 282 282-1 282 902 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000085225#CD196_RS16180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081047
Simplified PFAM architecture for RROC_2081047
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081047
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000085225#CD196_RS16180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_000826625
AssemblyG46R2_Q2 · Contighaploid
Genome composition4 189 317 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key