1 Response_reg#1
62-173 aa · 112 aa · 42.6% of protein
Raw token
Response_reg:62:6.11e-21:173:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLIC_RS01520
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_000825005
ClassRRTypeNarLLength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000825005#BLIC_RS01520Stable P2CS identifier used across views.
GenomeGCF_000825005Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 263 aa (62.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
204-255 aa · 52 aa · 19.8% of protein
Raw token
HTH_LUXR:204:0.000000000000137:255:52:58- Raw architecture: Response_reg:62:6.11e-21:173:113:111#HTH_LUXR:204:0.000000000000137:255:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000825005::NZ_CCWN01000002.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span244260-245051Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLIC_a00296RefSeq proteinWP_234703707.1
Context group ID
GCF_000825005::NZ_CCWN01000002.1::G00003Context members
BLIC_RS01520
Partner locus tags
BLIC_RS01520
Partner old locus tags
BLIC_a00296
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234703707.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLIC_RS01520Primary locus identifier stored in the genes table.
Old locus tagBLIC_a00296Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CCWN01000002.1Sequence record reported by the local genomic context database.
Genomic interval244 260-245 051 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 260-245 051 ntGCF_000825005::NZ_CCWN01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000825005::NZ_CCWN01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CCWN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span244 260-245 051 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 260 nt245 051 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLIC_RS01520GCF_000825005#BLIC_RS01520
RRNarLCurrent focus
244 260-245 051 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000825005#BLIC_RS01520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639856
Simplified PFAM architecture for RROC_0639856
PFAM domain coverage: 162 / 263 aa (61.6%)
1 aa263 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[62-171] | GerE[204-255]
- Domain count: 2
- Matched identifier: RROC_0639856
- Positioned domains: Response_reg 62-171 ; Response_reg 62-171 ; GerE 204-255 ; GerE 204-255
Cluster members and taxonomy
Representative gene: GCF_000825005#BLIC_RS01520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_000825005
AssemblyBIC1206122787.V1 · Contighaploid
Genome composition2 789 037 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 40 · HK 12 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key