1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000525:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AH68_RS01525
Histidine kinase, Classic
Bifidobacterium catenulatum PV20-2 · GCF_000800455
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000800455#AH68_RS01525Stable P2CS identifier used across views.
GenomeGCF_000800455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:4.89e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000525:249:66:64#HATPase_c:312:4.89e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000800455::NZ_CP007456.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span392542-394674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAH68_01565RefSeq proteinWP_039197004.1
Context group ID
GCF_000800455::NZ_CP007456.1::G00003Context members
AH68_RS01525AH68_RS01530
Partner locus tags
AH68_RS01525AH68_RS01530
Partner old locus tags
AH68_01565AH68_01570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039197004.1Primary protein accession used for annex mappings.
UniProt accessionA0A0A7I234Primary UniProt accession resolved in the annex database.
UniProt IDA0A0A7I234_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAH68_RS01525Primary locus identifier stored in the genes table.
Old locus tagAH68_01565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007456.1Sequence record reported by the local genomic context database.
Genomic interval392 542-393 888 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span392 542-394 674 ntGCF_000800455::NZ_CP007456.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000800455::NZ_CP007456.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007456.1All displayed genes belong to this local TCS context.
Neighborhood span392 542-394 674 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
392 542 nt394 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AH68_RS01525GCF_000800455#AH68_RS01525
HKClassicCurrent focus
392 542-393 888 nt · Forward (+)
AH68_RS01530GCF_000800455#AH68_RS01530
RROmpR
393 970-394 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000800455#AH68_RS01525The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1988664
Simplified PFAM architecture for HKOC_1988664
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1988664
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_000800455#AH68_RS01525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 447 716 · GCF_000800455
AssemblyASM80045v1 · Complete Genomehaploid
Genome composition2 370 978 bp · 56,0% GCBifidobacterium catenulatum PV20-2
Signal transduction countsGenes 31 · HK 13 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key