1 Response_reg#1
8-120 aa · 113 aa · 43.5% of protein
Raw token
Response_reg:8:5.49e-20:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS07185
Response regulator LytTR family
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassRRTypeLytTRLength260 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000771665#OU24_RS07185Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 260 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-241 aa · 88 aa · 33.8% of protein
Raw token
LytTR:154:1.05e-21:241:93:98- Raw architecture: Response_reg:8:5.49e-20:120:116:111#LytTR:154:1.05e-21:241:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000771665::NZ_JDUV01000011.1::G00006
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span61511-64428Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000011.1::G00006Context members
OU24_RS07180OU24_RS12620OU24_RS07185
Partner locus tags
OU24_RS07180OU24_RS12620OU24_RS07185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052119185.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A2X0Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A2X0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS07185Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000011.1Sequence record reported by the local genomic context database.
Genomic interval63 646-64 428 nt783 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 511-64 428 ntGCF_000771665::NZ_JDUV01000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000011.1All displayed genes belong to this local TCS context.
Neighborhood span61 511-64 428 nt2 918 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 511 nt64 428 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
OU24_RS07180GCF_000771665#OU24_RS07180
RROmpR
61 511-62 167 nt · Forward (+)
OU24_RS12620GCF_000771665#OU24_RS12620
HKClassic
62 164-63 468 nt · Forward (+)
OU24_RS07185GCF_000771665#OU24_RS07185
RRLytTRCurrent focus
63 646-64 428 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS08000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653356
Simplified PFAM architecture for RROC_0653356
PFAM domain coverage: 164 / 260 aa (63.1%)
1 aa260 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[45-120] | LytTR[154-241]
- Domain count: 2
- Matched identifier: RROC_0653356
- Positioned domains: Response_reg 45-120 ; Response_reg 45-120 ; LytTR 154-241 ; LytTR 154-241
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS08000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key